Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatactggggctatattcttgtccaatcctaacatacaacatactacgcatcctttgcctgaacactgatacatgtgtggtttctcctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g03280.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g03280.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G027726_T01 (Zea mays), 5'ss of exon 4
CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatactg---gggctatattc--ttgtccaatcctaacatacaacat-actacgcatcctttgcctgaacactgatacatgtgtggtttctc-ctgcag
|||||| || ||  |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||  |||||||||||||||||||| || |      ||   ||||||  |  |   || |  |  |     |  | ||      |   ||  |         || || ||  |||  | ||||||
CTACCTGGGCGGACTGCTATCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTCGCCGCCTCCATCTTCGGCCAATCCACTAGCAGCTTCATGTTTGAGgtgggagatcatatggaacatattcactgatggcatgcagatctgtggaacgaatatatgcgcgcggcgcggcttaattaacttgagtactttgacgctgcag

upper sequence: LOC_Os02g03280.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G029087_T02 (Zea mays), 5'ss of exon 3
CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatactggggctatattcttgtccaatcctaac---atacaacatactacgcatcctttgcctgaaca-ctgatacatgtgtggtttctcctgcag-----------------------------------
|||||| |||||  ||||||| || || |||||||||||||||||||||||| | ||||  |||||||| ||||||||| |   |||||||||||| ||||||     |||   ||||  |||| |  | |  |||    ||  | || ||   | |||| |||| ||  |  |||  | |||  ||    |  | ||                                     
CTACCTGGGTGGGCTGCTCTCGTCGGGGCTCTCCATCCTGCTCTGGCTGCAGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcctgcctctatcctctt-ttaatttataatccgatggagca-acagtgtatccattgcttgtccgtctgtgagatgcatgcacacagcagccttggcttgaacacttgcttgctttctcctcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33654226|gb|CF276840.1|CF276840
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|89175002|gb|CI041080.1|CI041080
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|33691450|gb|CF319689.1|CF319689
EST:     GCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: GCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88246084|gb|CI245933.1|CI245933
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86523386|gb|CI163592.1|CI163592
EST:     TCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: TCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88214481|gb|CI214330.1|CI214330
EST:     TTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: TTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|89178597|gb|CI015302.1|CI015302
EST:     CGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86482458|gb|CI125091.1|CI125091
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86522829|gb|CI163035.1|CI163035
EST:     CCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88986901|gb|CI033988.1|CI033988
EST:     CTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87035880|gb|CI190502.1|CI190502
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCGTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|5667507|gb|AU077476.1|AU077476
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|33687051|gb|CF315290.1|CF315290
EST:     GTTTGCCGCATCCATCTTTGGCCACTCCNACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: GTTTGCCGCATCCATCTTTGGCCACTCC-ACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|10611344|gb|AU108248.1|AU108248
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87035060|gb|CI189684.1|CI189684
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88240172|gb|CI239334.1|CI239334
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87018713|gb|CI254421.1|CI254421
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|27577740|gb|CB000435.1|CB000435
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|10794572|gb|AU108538.1|AU108538
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|8528287|gb|AU093102.1|AU093102
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGNACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|33693979|gb|CF322218.1|CF322218
EST:     AGTTTGCCGCATCCATCTTTGGTCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86543565|gb|CI183771.1|CI183771
EST:     CATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|10794613|gb|AU108579.1|AU108579
EST:     TCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGNCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: TCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|33690587|gb|CF318826.1|CF318826
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88218223|gb|CI218072.1|CI218072
EST:     CATCTGTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86899777|gb|CI327576.1|CI327576
EST:     CATCTTTGGCCACTCCACC-GCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88239060|gb|CI240222.1|CI240222
EST:     ATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: ATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88212268|gb|CI211908.1|CI211908
EST:     GGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: GGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88250571|gb|CI348801.1|CI348801
EST:     AG-TTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88202049|gb|CI202404.1|CI202404
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87018313|gb|CI265605.1|CI265605
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88839918|gb|CI017683.1|CI017683
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86522304|gb|CI162510.1|CI162510
EST:     TTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: TTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86493462|gb|CI136095.1|CI136095
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|2800946|gb|AA754240.1|AA754240
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GKTTACTTTGGCCTGTTGACCTCCC-GGGGRACATGGTGTATVACACG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACG
EST: gi|8527620|gb|AU092435.1|AU092435
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88209930|gb|CI209779.1|CI209779
EST:     CCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86602246|gb|CI262715.1|CI262715
EST:     CGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86541407|gb|CI181613.1|CI181613
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|18386073|gb|BM419272.1|BM419272
EST:     CCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|10611320|gb|AU108236.1|AU108236
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88216683|gb|CI214783.1|CI214783
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86547118|gb|CI187324.1|CI187324
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87025207|gb|CI265772.1|CI265772
EST:     AGTTTGCCGCATCTATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88215760|gb|CI215609.1|CI215609
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|38476716|gb|CF960849.1|CF960849
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86594095|gb|CI262323.1|CI262323
EST:     AGTTTGCCGCATCCATGTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|8527280|gb|AU092095.1|AU092095
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|11172928|gb|AU164527.1|AU164527
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|4715043|gb|AU056160.1|AU056160
EST:     CCATCTTTTGGCCACTTCCACCGNCAGCTTCATGTTTGAG                         GTTTA-TTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: CCATC-TTTGGCCAC-TCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|89190109|gb|CI013676.1|CI013676
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|88209120|gb|CI208969.1|CI208969
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87031521|gb|CI263894.1|CI263894
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86824208|gb|CI260812.1|CI260812
EST:     AGTTTGCCGCATCTATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86432210|gb|CI085821.1|CI085821
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87022538|gb|CI267675.1|CI267675
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|3760266|gb|C97522.1|C97522
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|87009281|gb|CI313754.1|CI313754
EST:     TTGCCGCATCCATCTTTGGCCACTCCACC-GCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: TTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|86593613|gb|CI264492.1|CI264492
EST:     GCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: GCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
EST: gi|89192556|gb|CI016565.1|CI016565
EST:     AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAG                         GTTGACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG
genomic: AGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 72 (downstream exon)
Score: 37

CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatact ... tctcctgcagGTTTACTTTGGCCTGTTGATCTTCCTGGGGTACATGGTGTATGACACGCAGGAGATCATCGAGAGGGCTCACCACGGTGACATGGACTACATCAAGCACG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatactggggctatattcttgtccaatcctaacatacaacatactacgcatcctttgcctgaacactgatacatgtgtggtttctcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT