1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgtctcggcttcttctgctgatcctgataactcgattgcttcctccctagaaattcgatggaagttttggtttactgacaatgtcaaatacatggtgtgctgactttttttttatgtcttaccctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCAGTTGGGCCTCTGATCAAGCTTGCTGTAGACTTTGACTCAAG
species | Oryza sativa |
transcript | LOC_Os02g03280.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAG AGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCAEST: gi|2800946|gb|AA754240.1|AA754240
genomic: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAGgttcgtctcg ... ctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCA
EST: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAG AGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCAEST: gi|163925765|gb|EG714601.1|EG714601
genomic: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAGgttcgtctcg ... ctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCA
EST: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAG AGGAAGAGGTTTGGGATTCTCTCGGCCGCTGCCCTGCTGGAAGGGGCTTCAEST: gi|86847748|gb|CI288816.1|CI288816
genomic: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAGgttcgtctcg ... ctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCA
EST: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAG AGGAAGAGGTACGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCA
genomic: GGTGCGTGGGGAGCATCGCCTGGTTGTTCTCGGTGCCTGTCTTTGAGGAGgttcgtctcg ... ctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCA
caatgtcaaatacatggtgtgctgactttttttttatgtcttaccctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCAGTTGGGCCTCTGATCAAGCTTGCTGTAGACTTTGACTCAAG
ctttttttttatgtct CT-rich tract
tttttttttatgtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtctcggcttcttctgctgatcctgataactcgattgcttcctccctagaaattcgatggaagttttggtttactgacaatgtcaaatacatggtgtgctgactttttttttatgtcttaccctgtgagcagAGGAAGAGGTTTGGGATTCTCTTGGCCGCTGCCCTGCTGGAAGGGGCTTCAGTTGGGCCTCTGATCAAGCTTGCTGTAGACTTTGACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT