1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattcttttttaatgctattatgctactttaggggaaaaatggaaagaaaaaggaagtcctagtctcatcgctatagcctgacatgcttacacctaaataagtgctctatttgttttcactctgtcatagcaaagctaatgattttatttttatttttgtgaaatgacaaaaag
species | Oryza sativa |
transcript | LOC_Os01g74640.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCAATACACTGCAAGCCAAGGATEST: gi|29682716|gb|CB678991.1|CB678991
genomic: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|87026198|gb|CI278322.1|CI278322
genomic: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|163926544|gb|EG712408.1|EG712408
genomic: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: GGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|89178250|gb|CI391429.1|CI391429
genomic: GGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: ATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|88466436|gb|CI529845.1|CI529845
genomic: ATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: TGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|88474187|gb|CI411458.1|CI411458
genomic: TGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|88509850|gb|CI437356.1|CI437356
genomic: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGATEST: gi|86890131|gb|CI321308.1|CI321308
genomic: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
EST: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG GTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
genomic: TTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattct ... tgacaaaaagGTAAGAAGATCAATTCTGTAAGTCTGCTGCACTGCACTGCAAGCCAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAGgtaacattcttttttaatgctattatgctactttaggggaaaaatggaaagaaaaaggaagtcctagtctcatcgctatagcctgacatgcttacacctaaataagtgctctatttgttttcactctgtcatagcaaagctaatgattttatttttatttttgtgaaatgacaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG