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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACACTGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgctgcgacatccccaaccgcctcagcccatcggtcgatggggaaagaagagcaactttgtgaatcattcgctgtgatgcaagaaaagggcat...

Basic information

species Oryza sativa
transcript LOC_Os01g74640.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74640.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G165629_T02 (Zea mays), 5'ss of exon 1
CTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACAC-TGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgctgcgacatccccaaccgcctcagcccatcggtcgatggggaaagaagagcaactttgtgaatcattcgctgtgatgcaagaaaag--ggcat--
| | || |  ||| |||||  ||   |||     | ||||||   | ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||    ||     ||| || ||  | | |    | | |   |   ||| |  | |  |||    |  |  | |   ||   |  | |     ||  ||  |  
CCACGA-GCGGCCGCCGCCGGCGAGACAGGGGAGCATGGCGACTTCCTCCTCCTTCACCGCCGTCTTCTTCAGCAGCGCCTTCGCCGCCTGCTTCGCAGAGgta---ccgtcagcacacccgcattc-cttttttctagcctcccgcgggcatcgcatcgcatacatccgtctaagaggcaaagtcgaagtcggagtcggagtcg

upper sequence: LOC_Os01g74640.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G852877_T01 (Zea mays), 5'ss of exon 1
CTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACAC-TGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgctgcgacatccccaaccgcctcagcccatcggtcgatggggaaagaagagcaactttgtgaatcattcgctgtgatgcaagaaaagggcat-----
| | |||   ||| |||||  ||   | |   | | ||||||  || ||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||  |   | || ||| || ||      |     |     |  || |        ||||  |         | | ||| | |    | |   ||    |     
CCACGAA-CGGCCGCCGCCGACGAGACGGGGGCGCATGGCGACTGCATCCTCCTTCACCGCCATCTTCTTCAGCAGCGCCTTCGCGGCCTGCTTCGCGGAGgta--ctgtccgc-acacccgca-ttatttagtttctattttttatagcctctcgcgagccgcgcatccgtccgtccgc-gaggcagaggcggagccagtggaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58655848|gb|CK044528.1|CK044528
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88766139|gb|CI775229.1|CI775229
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88692659|gb|CI736234.1|CI736234
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88724279|gb|CI747538.1|CI747538
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88305150|gb|CI652088.1|CI652088
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88352327|gb|CI615581.1|CI615581
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|33795983|gb|CF323859.1|CF323859
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|86905823|gb|CI290957.1|CI290957
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88375556|gb|CI681339.1|CI681339
EST:     CCTTCGCCGNCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88745080|gb|CI768440.1|CI768440
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88730203|gb|CI753818.1|CI753818
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88335568|gb|CI642792.1|CI642792
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88288360|gb|CI661565.1|CI661565
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88694449|gb|CI738487.1|CI738487
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88732454|gb|CI755631.1|CI755631
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88442656|gb|CI693657.1|CI693657
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGANACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
EST: gi|88342848|gb|CI640181.1|CI640181
EST:     CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAG                         GTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG
genomic: CCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgc ... ctctcatcagGTGTGCACCATTCCTCTCGACACAGCCAAAGTGCGGCTTCAGCTGCAAAAG