1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctcaaaccatctgttcctttccgatgctatcaggtttctgaatctgtgtgtgtgaaccgacagcgtcctctccctgattgattaatgtgttgtgcag
species | Oryza sativa |
transcript | LOC_Os01g74340.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAG TGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGEST: gi|163925483|gb|EG711572.1|EG711572
genomic: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctca ... tgttgtgcagTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
EST: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAG TGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGEST: gi|88348679|gb|CI630020.1|CI630020
genomic: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctca ... tgttgtgcagTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
EST: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAG TGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGEST: gi|117246825|gb|CT843690.1|CT843690
genomic: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctca ... tgttgtgcagTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
EST: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAG TGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGEST: gi|25801945|gb|CA757906.1|CA757906
genomic: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctca ... tgttgtgcagTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
EST: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAG TGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGEST: gi|88345153|gb|CI628407.1|CI628407
genomic: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctca ... tgttgtgcagTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
EST: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAG TGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
genomic: TGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctca ... tgttgtgcagTGAAGGTAATATGCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGgtacatctcaaaccatctgttcctttccgatgctatcaggtttctgaatctgtgtgtgtgaaccgacagcgtcctctccctgattgattaatgtgttgtgcag
- - - - - - - - - - - - - - - - AGGATG