1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCTTATGTATGTCCTTGTACCGATGCCATGCCTATTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGGgtatggtttgatttgttgttttcgttccagaaactttaccatacatactgtactacttggatgtaaactaacatatgtaaagaatagtttggaataaggaaattccttctgatttgtagttgtgacaaactaatgatagagtgtttatcatttcag
species | Oryza sativa |
transcript | LOC_Os01g73570.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGG GTGGTTCAATGCTGCAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCATEST: gi|86820858|gb|CI357609.1|CI357609
genomic: TTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGGgtatggtttg ... atcatttcagGTGGTTCAATGCTGCAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCAT
EST: GATGGTGGAGG GTGGTTCAATGCTGCAAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCAEST: gi|3763127|gb|AU029879.1|AU029879
genomic: GATGGTGGAGGgtatggtttg ... atcatttcagGTGGTTCAATGCTGC-AAAATTCCTGACTGGTGCATCTGCCATGGGAAGCA
EST: TTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGG GTGGTTCAATGCTGCAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCATEST: gi|55409227|gb|CV721603.1|CV721603
genomic: TTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGGgtatggtttg ... atcatttcagGTGGTTCAATGCTGCAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCAT
EST: TTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGG GTGGTTCAATGCTGCAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCAT
genomic: TTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGGgtatggtttg ... atcatttcagGTGGTTCAATGCTGCAAAATTCCTGACTGGTGCATCTGCCATGGGAAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTTATGTATGTCCTTGTACCGATGCCATGCCTATTCTTCGGTGGTGGATCTACCCAGTTCTTGACTAGCAGAGATGGTGGAGGgtatggtttgatttgttgttttcgttccagaaactttaccatacatactgtactacttggatgtaaactaacatatgtaaagaatagtttggaataaggaaattccttctgatttgtagttgtgacaaactaatgatagagtgtttatcatttcag
- - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG