1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gatgtgtgtcttgacagtgtaagtatattattcagattcttttctgaccattcttttacatttaagataagtgttaacaatataattgcttctactacagGCTCGCTGGACTTGCATTTATGTTCTCAACAAGTATTCTTTTGCAAATACTG
species | Oryza sativa |
transcript | LOC_Os01g73570.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGATTGGGCGGCTAGGGTTCCGGTTCGAGTTTGGTGTTACGATTGGCTG TEST: gi|88398729|gb|CI598694.1|CI598694
genomic: GGGATTGGGCGGCTAGGGTTCCGGTTCGAGTTTGGTGTTACGATTGGCTGgtgcgtgctt ... tctactacag-
EST: GGGATTGGGCGGCTAGGGTTCCGGTTCGAGTTTGGTGTTACGATTGGCTG T
genomic: GGGATTGGGCGGCTAGGGTTCCGGTTCGAGTTTGGTGTTACGATTGGCTGgtgcgtgctt ... tctactacag-
gaccattcttttacatttaagataagtgttaacaatataattgcttctactacagGCTCGCTGGACTTGCATTTATGTTCTCAACAAGTATTCTTTTGCAAATACTG
tgttaac putative branch site (score: 2)
ttgcttct putative PPT
ttttacatttaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtgtgtcttgacagtgtaagtatattattcagattcttttctgaccattcttttacatttaagataagtgttaacaatataattgcttctactacagGCTCGCTGGACTTGCATTTATGTTCTCAACAAGTATTCTTTTGCAAATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - tgtcttg
- - - - - - - - - - - - - - - - - - - - tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata