1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaactaatcaacccaaacttcatcgacagtgtttgactatcatgctgatcactaacagaggaattaacaatcaatcgatctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACCTGGCGTCGCTCATCACGCTCGACGTCGAGGACGGCAAGGTTGTGAAGC
species | Oryza sativa |
transcript | LOC_Os01g73500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGACCATCGACEST: gi|33683454|gb|CF311693.1|CF311693
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|33659979|gb|CF290946.1|CF290946
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|55430712|gb|CV728357.1|CV728357
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|25803799|gb|CA759760.1|CA759760
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCAGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|33665646|gb|CF296613.1|CF296613
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|88340926|gb|CI637086.1|CI637086
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|33659959|gb|CF290926.1|CF290926
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|88290458|gb|CI665247.1|CI665247
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|33659939|gb|CF290906.1|CF290906
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|66916268|gb|CX103116.1|CX103116
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCAGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTEST: gi|88327415|gb|CI645201.1|CI645201
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACT
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTEST: gi|2428527|gb|C72990.1|C72990
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGT
EST: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACEST: gi|86595266|gb|CI262504.1|CI262504
genomic: TCGTGGAGTACACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
EST: CACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAG ATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
genomic: CACAATTACAGAAAACGAAACCGCGCCCGGAAAAGTCGAGgtaactaatc ... tctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGAC
tgactatcatgctgatcactaacagaggaattaacaatcaatcgatctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACCTGGCGTCGCTCATCACGCTCGACGTCGAGGACGGCAAGGTTGTGAAGC
tctgtttc CT-rich tract
aattaacaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaatcaacccaaacttcatcgacagtgtttgactatcatgctgatcactaacagaggaattaacaatcaatcgatctgtttcagATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACCTGGCGTCGCTCATCACGCTCGACGTCGAGGACGGCAAGGTTGTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC