1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgttcacctgttctctgcttagctctgtgttgttgattcggtgacgaaacaagacagaaaaaaaaaaaagttgcacgcatatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCCACATTCGAGGACCCGCTTATGCGAGCTCATGG
species | Oryza sativa |
transcript | LOC_Os01g73500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|33662848|gb|CF293815.1|CF293815
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|33683454|gb|CF311693.1|CF311693
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|33659979|gb|CF290946.1|CF290946
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|55430712|gb|CV728357.1|CV728357
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|88344530|gb|CI637215.1|CI637215
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|33665646|gb|CF296613.1|CF296613
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|38475002|gb|CF959135.1|CF959135
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|88340926|gb|CI637086.1|CI637086
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|33659959|gb|CF290926.1|CF290926
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|88290458|gb|CI665247.1|CI665247
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|33659939|gb|CF290906.1|CF290906
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|66916268|gb|CX103116.1|CX103116
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|88327415|gb|CI645201.1|CI645201
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|2428527|gb|C72990.1|C72990
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCEST: gi|88689446|gb|CI733022.1|CI733022
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
EST: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACAT ATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
genomic: AAGGCAGCCTCGCCCGTCTCCCGGCACATCATGCCGCATCTCCTCAACATgtacgttcac ... tatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGC
gattcggtgacgaaacaagacagaaaaaaaaaaaagttgcacgcatatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCCACATTCGAGGACCCGCTTATGCGAGCTCATGG
tgttgat putative branch site (score: 28)
agaaaaaaaaaaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttcacctgttctctgcttagctctgtgttgttgattcggtgacgaaacaagacagaaaaaaaaaaaagttgcacgcatatgttgcagATACGGATCGTGCGCGACGGCTCGGGACTTCGAGATTTACGCGGCGCATGCCACATTCGAGGACCCGCTTATGCGAGCTCATGG
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