1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCCCTTGTTGGCTAGGCTGCTAGCTCTCTGCCCCTCTCGCCTGTCGGCCTCTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatccatagtgagataagaaattcatctatgaatcctctttctcaaatccccaatcttttttattggttttgaatctgaattgattactgcgat...
species | Oryza sativa |
transcript | LOC_Os01g72820.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|88371046|gb|CI595158.1|CI595158
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|88311659|gb|CI574876.1|CI574876
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|88371248|gb|CI597725.1|CI597725
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|29676354|gb|CB672629.1|CB672629
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|86904367|gb|CI308577.1|CI308577
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|88359548|gb|CI621079.1|CI621079
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAAEST: gi|88825863|gb|CI776428.1|CI776428
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
EST: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGG GATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
genomic: CTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatc ... tttcatacagGATTTGCGGTCTTAGAAAATTTCGGTATATGAAGTTAGGCACACTCAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTTGTTGGCTAGGCTGCTAGCTCTCTGCCCCTCTCGCCTGTCGGCCTCTACTCCGGCTAACCAGAGCTCCTCCTCCCTTGCTCCCTTGGCTACACGGgtataccatccatagtgagataagaaattcatctatgaatcctctttctcaaatccccaatcttttttattggttttgaatctgaattgattactgcgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC