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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttcttcgcgtcctagcttaatttatctctcatgctttaatttaatcgttaacatgttttaaatatggaatccgcttaatccttttgtcttctgttttacagGTTCAATATTGTCGGACAG

Basic information

species Oryza sativa
transcript LOC_Os01g71740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88720346|gb|CI743645.1|CI743645
EST:     AAGCTGGCCGGCAAGGAATGGGCTCCCTTGGCTTCTTGGGTCACCGGCTG                         GTTCAATATTGTCGGACAG
genomic: AAGCTGGCCGGCAAGGAATGGGCTCCCTTGGCTTCTTGGGTCACTGGCTGgtgtgttctt ... tgttttacagGTTCAATATTGTCGGACAG
EST: gi|86821680|gb|CI309186.1|CI309186
EST:     AAGCTGGCCGGCAAGGAATGGGCTCCCTTGGCTTCTTGGGTCACTGGCTG                         GTTCAATATTGTCGGACAG
genomic: AAGCTGGCCGGCAAGGAATGGGCTCCCTTGGCTTCTTGGGTCACTGGCTGgtgtgttctt ... tgttttacagGTTCAATATTGTCGGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaacatgttttaaatatggaatccgcttaatccttttgtcttctgttttacagGTTCAATATTGTCGGACAG
                                tccttttgtcttctgt  CT-rich tract
         ttttaaatatggaat  TA-rich tract