1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtgcttcttcttcccttcttttaccacacttcattgcgatcatttttcaccaaattaagcttgtgagtgttaatttggcatatattgcaatcctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGCGTCACGACGACGTACGGCACGGGGCTGCGCTACGGCGGGCCAGTGTCC
species | Oryza sativa |
transcript | LOC_Os01g71740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|88696500|gb|CI740075.1|CI740075
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|88290383|gb|CI665172.1|CI665172
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|88720209|gb|CI743508.1|CI743508
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|88719257|gb|CI742767.1|CI742767
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|88720346|gb|CI743645.1|CI743645
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGNTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|88296231|gb|CI667621.1|CI667621
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGEST: gi|86821680|gb|CI309186.1|CI309186
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
EST: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTC CCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
genomic: GCCCGGCTGCACCAGCTGGGCTACAGGCAAGAGCTCAAGCGTGGCCTCTCgtatgtgctt ... cctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGG
tcaccaaattaagcttgtgagtgttaatttggcatatattgcaatcctttgttagCCTTGTTTCCAACTTCGCCTTCTCCTTCTCCATCATCTCCGTGCTGACGGGCGTCACGACGACGTACGGCACGGGGCTGCGCTACGGCGGGCCAGTGTCC
tgttaat putative branch site (score: 3)
tcctttgtt putative PPT
tgttaattt TA-rich tract