1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCAACTAGTTCTCTCGAAAAACCTCGAGAACGCCAGAACTACTCTCGCTGCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactattgttagtaacctaatactgggccatgactaagctaatgattattggcaagttatggactgcgggtaaagcgtacatctactgcagtatga...
species | Oryza sativa |
transcript | LOC_Os01g71624.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGAEST: gi|86824827|gb|CI265044.1|CI265044
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
EST: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGAEST: gi|87025360|gb|CI267726.1|CI267726
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
EST: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAATTAAAGGATATATACCTTGAEST: gi|87025184|gb|CI265749.1|CI265749
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
EST: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGAEST: gi|86855522|gb|CI267051.1|CI267051
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
EST: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGAEST: gi|88276210|gb|CI396814.1|CI396814
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
EST: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGAEST: gi|86855686|gb|CI269013.1|CI269013
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
EST: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAG GAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
genomic: GCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactat ... aaacttgtagGAGATGCGAGACTGTGTCCAACGTGGCAAAACTAAAGGATATATACCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAACTAGTTCTCTCGAAAAACCTCGAGAACGCCAGAACTACTCTCGCTGCTGATAACGTTACGTTCAGAGCGCATGAGGACTAGAGTTCACGGAACAGgtaccactattgttagtaacctaatactgggccatgactaagctaatgattattggcaagttatggactgcgggtaaagcgtacatctactgcagtatga
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT