1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtatgaccgcagcttctagaatggggatatacctagttattatgtcaattaataatgtggtatctctgtgtagtggttcttatttaagttctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGTAAATATCTTGATTATCTCGCGAGCTGTATGTGTGAATTGTGAAAACCT
species | Oryza sativa |
transcript | LOC_Os01g71624.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG GAGTCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGEST: gi|87025360|gb|CI267726.1|CI267726
genomic: CGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGEST: gi|87025184|gb|CI265749.1|CI265749
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGEST: gi|86855522|gb|CI267051.1|CI267051
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGEST: gi|86855686|gb|CI269013.1|CI269013
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
tcaattaataatgtggtatctctgtgtagtggttcttatttaagttctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGTAAATATCTTGATTATCTCGCGAGCTGTATGTGTGAATTGTGAAAACCT
aattaat putative branch site (score: 3)
ttctcgc putative PPT
ttcttatttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtatgaccgcagcttctagaatggggatatacctagttattatgtcaattaataatgtggtatctctgtgtagtggttcttatttaagttctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGTAAATATCTTGATTATCTCGCGAGCTGTATGTGTGAATTGTGAAAACCT
- - - -ccgcagc