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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgtttattatttaagtaactgtttctgaatttctcagaaagagcctttattaaattttttatggtcatatag

Basic information

species Oryza sativa
transcript LOC_Os01g71590.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680927|gb|CB677202.1|CB677202
EST:     CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG                         ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNN
genomic: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: gi|88839237|gb|CI000709.1|CI000709
EST:     GATTTCTTACAGCGACATAGTTCACAAAG                         ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAG
genomic: GATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: gi|27554312|gb|CA998212.1|CA998212
EST:     CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG                         ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNN
genomic: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: gi|33801197|gb|CF326472.1|CF326472
EST:     GATTTCTTACAGCGACATAGTTCACAAAG                         ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNN
genomic: GATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: gi|88845066|gb|CI083991.1|CI083991
EST:     CGACATAGTTCACAAAG                         ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNN
genomic: CGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA