1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatggttcttccctttgtctaatagatttatgcaaaacttccactaacagcttgagcttgtgttgtatgtaaacatttcatcctgtttctatgagtttaaattaaatttgaactttttgacctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
species | Oryza sativa |
transcript | LOC_Os01g70320.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTGAACCTAAATTCTTGGAGGCGTTTG ATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAGEST: gi|29626303|gb|CB631314.1|CB631314
genomic: GTGAACCTAAATTCTTGGAGGCGTTTGgtaatggttc ... cctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
EST: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTG ATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAGEST: gi|29667592|gb|CB663867.1|CB663867
genomic: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGgtaatggttc ... cctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
EST: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTG ATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAGEST: gi|29636867|gb|CB641876.1|CB641876
genomic: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGgtaatggttc ... cctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
EST: CAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTG ATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAGEST: gi|58595919|gb|CK006447.1|CK006447
genomic: CAGATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGgtaatggttc ... cctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
EST: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTG ATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAEST: gi|218479946|gb|FG955453.1|FG955453
genomic: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGgtaatggttc ... cctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAA
EST: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTG ATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
genomic: ATTTTAAATCACCTGGTGAACCTAAATTCTTGGAGGCGTTTGgtaatggttc ... cctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
tttcatcctgtttctatgagtttaaattaaatttgaactttttgacctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
ttttgac putative branch site (score: 30)
tatgagtttaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggttcttccctttgtctaatagatttatgcaaaacttccactaacagcttgagcttgtgttgtatgtaaacatttcatcctgtttctatgagtttaaattaaatttgaactttttgacctattgcagATCTTAGCCATGAAGAGGCAGAAGATGTTAGCTTTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG