1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...catgtttggacaagtgacaaaccatatgtgctttataaatacaggtttttttttctaggcttccttatcacttctctcctcactagttattgttctgtagGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAG
species | Oryza sativa |
transcript | LOC_Os01g70320.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGCATGCTCTCAG-TGAAAATGGGGCTTAGAGAGCTTTCATCATTGAAG GTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAEST: gi|58595919|gb|CK006447.1|CK006447
genomic: GAGCATGCTCTCAGTTG-AAATGGGGCTTAGAGAGCTTTCATCATTGAAGgtattccact ... tgttctgtagGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATA
EST: AGAGCATGCTCTCAGTTGAAATGGGGCTTAGAGAGCTTTCATCATTGAAG GTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATA
genomic: AGAGCATGCTCTCAGTTGAAATGGGGCTTAGAGAGCTTTCATCATTGAAGgtattccact ... tgttctgtagGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATA
tttttttttctaggcttccttatcacttctctcctcactagttattgttctgtagGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAG
tcctcac putative branch site (score: 8)
ttgttct putative PPT
tagttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtttggacaagtgacaaaccatatgtgctttataaatacaggtttttttttctaggcttccttatcacttctctcctcactagttattgttctgtagGTGGAAGATGCTGTTGTGGTTGCACTTGGTCAACACCGGAGACCTAGTATAGTTCGGCAATTCACATCAG
catgttt
- - - - - - - - acaaacc
- - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - aaatacag