1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgcattctccacatcataatatttttctcctccagctgagggttttttttcagttgtgttcgatctgatcctaccgttgttgttcactctcttaatgcttgctctgtacttctgttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCCTGCACTCTGCTGGCCTTCAGAACGCAATGTAATCAGCAAGTCAGAAAG
species | Oryza sativa |
transcript | LOC_Os01g70310.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCEST: gi|88240391|gb|CI239553.1|CI239553
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCEST: gi|86601405|gb|CI253733.1|CI253733
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCEST: gi|86601214|gb|CI251588.1|CI251588
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCEST: gi|86535825|gb|CI176031.1|CI176031
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCEST: gi|88225033|gb|CI224949.1|CI224949
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCEST: gi|89182595|gb|CI113964.1|CI113964
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCCCEST: gi|86594391|gb|CI251263.1|CI251263
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
EST: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAG CAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
genomic: CGGTCATCAGCTGTTTCAATGGGTTTGCAATGGATGTTTTCCGCGCCGAGgtttgcattc ... gttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTC
tcctaccgttgttgttcactctcttaatgcttgctctgtacttctgttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCCTGCACTCTGCTGGCCTTCAGAACGCAATGTAATCAGCAAGTCAGAAAG
tcttaat putative branch site (score: 3)
cttctgtttt putative PPT
tcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcattctccacatcataatatttttctcctccagctgagggttttttttcagttgtgttcgatctgatcctaccgttgttgttcactctcttaatgcttgctctgtacttctgttttgccagCAATGCAGGGATGGTCCTGGACTCGGGCCTGAAGAAATTAAGACCGTGCTCCTGCACTCTGCTGGCCTTCAGAACGCAATGTAATCAGCAAGTCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG