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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCACCCATCAACACCCACATTGCAGACGTTTCCTGGCCGCGTTAAGGAGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACGgttagtcaaattttgaccatgattgttaagcctttgcactagtggcaattatgcaattggcccttgatacttatatgcttaagcatgctttagtgctcaa...

Basic information

species Oryza sativa
transcript LOC_Os01g70310.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70310.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G173534_T02 (Zea mays), 5'ss of exon 2
CTTCCACCCATCAACACCCACATTGCAGACGTTTCCTGGCCGCGTTAAGGAGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACGgttagtcaaattttgaccatgattgttaagcctttgcactagtggcaattatgcaattggcccttgatacttatatgcttaagcatgctttagtgctcaa----------
|||| ||||||||||||| ||||||||||| ||||||||||  || ||||| |||||||||||   |||||| |||||||||| ||| ||||||||||| || |||| || ||||      ||||||||    ||    ||    |  | ||  | |||     |||||| |   | ||||||| ||||||| || | |           
CTTCAACCCATCAACACCGACATTGCAGACATTTCCTGGCCAGGTCAAGGAAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaaatttggtt---attgttaa--tgttaagttaagcacc-tcatttagttg---tgtgatacattgctacttaagcctgcttta-tgttaacatccatacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88240391|gb|CI239553.1|CI239553
EST:     AGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACG                         GTCGAAGTTAGGATGAGGGAAGGTCATGCAGTCAATATCCACATGTTCTGC
genomic: AGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACGgttagtcaaa ... gtttgttcagGTCGAAGTTAGGATGAGGGAAGGTCATGCAGTCAATATCCACATGTTCTGC
EST: gi|86601405|gb|CI253733.1|CI253733
EST:     AGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACG                         GTCGAAGTTAGGATGAGGGAAGGTCATGCAGTCAATATCCACATGTTCTGC
genomic: AGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACGgttagtcaaa ... gtttgttcagGTCGAAGTTAGGATGAGGGAAGGTCATGCAGTCAATATCCACATGTTCTGC
EST: gi|86594391|gb|CI251263.1|CI251263
EST:     AGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACG                         GTCGAAGTTAGGATGAGGGAAGGTCATGCAGTCAATATCCACATGTTCTGC
genomic: AGGAACTTTGCCCAACCTCATTTCCAAGCCCTAGTGGTCAACAAGCCACGgttagtcaaa ... gtttgttcagGTCGAAGTTAGGATGAGGGAAGGTCATGCAGTCAATATCCACATGTTCTGC