1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatgtctgtcagttacctgaagatgttgataattcctaaatgtggtttttttttgtccctgttatttgtccgtttacctttccttgttttggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGTG
species | Oryza sativa |
transcript | LOC_Os01g69850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG ATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTEST: gi|58600017|gb|CK010545.1|CK010545
genomic: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGgtacattgta ... tggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGT
EST: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG ATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTEST: gi|87016149|gb|CI281892.1|CI281892
genomic: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGgtacattgta ... tggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGT
EST: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG ATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTEST: gi|88977503|gb|CI025239.1|CI025239
genomic: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGgtacattgta ... tggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGT
EST: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG ATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTEST: gi|58664123|gb|CK052809.1|CK052809
genomic: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGgtacattgta ... tggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGT
EST: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG ATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAATTCCAGT
genomic: AACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAGgtacattgta ... tggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGT
gtttttttttgtccctgttatttgtccgtttacctttccttgttttggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGTG
tccgtttacctttcct CT-rich tract
tgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgtctgtcagttacctgaagatgttgataattcctaaatgtggtttttttttgtccctgttatttgtccgtttacctttccttgttttggattgcagATGTTGGCAAAACAAAATGGTGAAGGGAGTAGGAGCAGAGCAAACTCCAGTGGCTCTAGGGGGCAGGAGGAAGGAAGTGCATGAGCAGGAAGCACAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-catgtct
- - - - - - - - cctgaag
- - - - - - - - - - - -atgttga