1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacactcatatgagttttgactacacgtcccaaatctttattgactttgctcaacagaaatctgagcattctagccaacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g69850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTG GTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTEST: gi|87016149|gb|CI281892.1|CI281892
genomic: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTGgtaacactca ... caacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACT
EST: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTG GTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTEST: gi|88977503|gb|CI025239.1|CI025239
genomic: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTGgtaacactca ... caacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACT
EST: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTG GTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTEST: gi|58664123|gb|CK052809.1|CK052809
genomic: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTGgtaacactca ... caacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACT
EST: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTG GTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACT
genomic: GATGAAAATGCAAGTATACACTCCAGGCTTAGGGACATAACGGCCTGgtaacactca ... caacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACT
caaatctttattgactttgctcaacagaaatctgagcattctagccaacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG
tattgac putative branch site (score: 51)
tttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacactcatatgagttttgactacacgtcccaaatctttattgactttgctcaacagaaatctgagcattctagccaacctgcagGTCTCTCCAAAACAATGCTGACGAGTCGGATGCTAATCAGCTAGAGAAACTGGAGAAACTGCTGACAAATGCTTTGAGGGATACGAAATCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG