1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctcacaaagatcaacctatacctcttttcctatgttaaatgattttgtaggctatgtcattaagagacatgatctgttcttttaccttctttttggcagGTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTTAGGTCAACCTCAACAATTATCGTCCGCATCTGGTCGTCTTGGTTAGTGC
species | Oryza sativa |
transcript | LOC_Os01g68630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGTTGCCAGAAATCAGATGGAATCCCTCCTCTGCATTCTGTGGCAG GTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTTEST: gi|58689206|gb|CK077893.1|CK077893
genomic: ATTCAGTTGCCAGAAATCAGATGGAATCCCTCCTCTGCATTCTGTGGCAGgtgctgatac ... tttttggcagGTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTT
EST: ATTCAGTTGCCAGAAATCAGATGGAATCCCTCCTCTGCATTCTGTGGCAG GTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTT
genomic: ATTCAGTTGCCAGAAATCAGATGGAATCCCTCCTCTGCATTCTGTGGCAGgtgctgatac ... tttttggcagGTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTT
ttgtaggctatgtcattaagagacatgatctgttcttttaccttctttttggcagGTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTTAGGTCAACCTCAACAATTATCGTCCGCATCTGGTCGTCTTGGTTAGTGC
tctgttcttttacctt CT-rich tract
ttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcacaaagatcaacctatacctcttttcctatgttaaatgattttgtaggctatgtcattaagagacatgatctgttcttttaccttctttttggcagGTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTTAGGTCAACCTCAACAATTATCGTCCGCATCTGGTCGTCTTGGTTAGTGC
- - acaaaga
- - - - - - - - - - - - - - - ctatgtt
- - - - - - - - - - - - - - - - - - - - - - - tgtaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaca