1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcggtgttagtacactttcctgtttgttttctcggcagcactgactaacatgaatgagatattgttttcttgctattttagtgtaatggcttgtttgattattcatgataattgaatgactgggataaaaaatggtatggtgtaattgtacagGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCACTATACACAAACAACTCTTGCCCGATCATCACGCAGATGCAGAATTGTCA
species | Oryza sativa |
transcript | LOC_Os01g68630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAGAAGACTAATGAAG GTAGCTGTGATCTATACCATGEST: gi|58607644|gb|CK035677.1|CK035677
genomic: TCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAGAAGACTAATGAAGgtgcggtgtt ... aattgtacagGTAGCTGTGATCTATACCATG
EST: CGACAATCTTCAGAAGACTAATGAAG GTAGCTGTGATCTATACCATTGACATTGGGTTTTTGATTCTTCTGGACCACEST: gi|29616267|gb|CB621279.1|CB621279
genomic: CGACAATCTTCAGAAGACTAATGAAGgtgcggtgtt ... aattgtacagGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCAC
EST: TCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAGAAGACTAATGAAG GTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCACEST: gi|58689206|gb|CK077893.1|CK077893
genomic: TCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAGAAGACTAATGAAGgtgcggtgtt ... aattgtacagGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCAC
EST: TCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAGAAGACTAATGAAG GTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCAC
genomic: TCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAGAAGACTAATGAAGgtgcggtgtt ... aattgtacagGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCAC
ttattcatgataattgaatgactgggataaaaaatggtatggtgtaattgtacagGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCACTATACACAAACAACTCTTGCCCGATCATCACGCAGATGCAGAATTGTCA
ataaaaaatggtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggtgttagtacactttcctgtttgttttctcggcagcactgactaacatgaatgagatattgttttcttgctattttagtgtaatggcttgtttgattattcatgataattgaatgactgggataaaaaatggtatggtgtaattgtacagGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGACCACTATACACAAACAACTCTTGCCCGATCATCACGCAGATGCAGAATTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG