Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88330965|gb|CI638373.1|CI638373EST: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST:
gi|86908163|gb|CI300654.1|CI300654EST: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST:
gi|88674912|gb|CI729025.1|CI729025EST: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST:
gi|163927814|gb|EG712526.1|EG712526EST: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST:
gi|88671875|gb|CI725817.1|CI725817EST: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST:
gi|88962880|gb|CI025366.1|CI025366EST: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST:
gi|89169984|gb|CI039261.1|CI039261EST: CTCACCGAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACAGACTATGGAGAACAATATCCTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgccatcttgctattacaaagtatgtaattaattgagttttgtgtttttctgttcctcaagtatgttttcttaaaactttagttttatgtttt
- - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA