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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacaagaccaaacaaacatgaatgccaaagttaaatcagaaagtatgtaaatatctggaagatactatggttaagatgatcttcaaatgtatgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGTTCGACTGCTCCAATATGCACATACAACGAGTGCAGAGGGTGTCGATTCA

Basic information

species Oryza sativa
transcript LOC_Os01g68598.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68598.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G170975_T01 (Zea mays), 3'ss of exon 2
aacaagaccaaacaaacatgaatgccaaagttaaatcagaaagtatgtaaatatctggaagatactatggttaagatgat--cttcaaatgtat-gccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGTTCGACTGCTCCAATATGCACATACAACGAGTGCAGAGGGTGTCGATTCA
|| |   | | | || | || ||    |||||||  || |||||    |   | ||  |||  | ||| ||||   ||||   |||| |||  | |  |||||| |||||||||||  |  ||| | || |||||||||||||||||||| || || | |||||||||||| ||||||||||||||||| |||||||||||||
aaaagtgcaataaaaccttgtatt---aagttaacccacaaagtgctcagtgaccttaaagcaagtatagttagcgtgatattttcacatgccttgatattagGGTCTAAACAAGGGCATACTGTCAAAGTATGCAAGGAGAATGTTGATCGGCTCAATTGCTCCAATATGTACATACAACGAGTGCAGGGGGTGTCGATTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88330965|gb|CI638373.1|CI638373
EST:     CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST: gi|86908163|gb|CI300654.1|CI300654
EST:     CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST: gi|88674912|gb|CI729025.1|CI729025
EST:     CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST: gi|163927814|gb|EG712526.1|EG712526
EST:     CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST: gi|88671875|gb|CI725817.1|CI725817
EST:     CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST: gi|88962880|gb|CI025366.1|CI025366
EST:     CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
EST: gi|89169984|gb|CI039261.1|CI039261
EST:     CTCACCGAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAG                         GTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT
genomic: CTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAACATCAAGgtacatatgc ... atgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaatatctggaagatactatggttaagatgatcttcaaatgtatgccattagGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGTTCGACTGCTCCAATATGCACATACAACGAGTGCAGAGGGTGTCGATTCA
                                       aaatgtat  TA-rich tract