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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttagaactgattttctttctcttgtctacgctccacccaccattattcgattggaatgtatctgctgttttcctgaataaatcgtgctaagcctccttggtgcgtgcgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAAT

Basic information

species Oryza sativa
transcript LOC_Os01g68480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68480.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G017419_T01 (Zea mays), 3'ss of exon 2
gtcagttagaactgattttctttctcttgtctacgctccacccaccattattcgattggaatgtatctgctgttttcctgaataaatcgtgctaagcctccttggtgcgtgcgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAAT
|| || |||     |   |   |    | | ||      ||    ||||   ||  ||  || || ||  | | ||| | |     |  || |        ||| ||        | |||| | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||||| |||||||| || || |||||  | || ||  
gtgaggtag---ctagcatagctaggatatatagttattactttgcattggccgcatg--atctacctcttctcttctttatctgttgttgttg-------ttgttg--------ttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTCAAGGGTGGGAAGGTCGTGAAGGAGGTGACCGGCGCCAAGATCGACGAGC

upper sequence: LOC_Os01g68480.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G025954_T01 (Zea mays), 3'ss of exon 2
--------------------------------------gtcagttagaactgattttctttctcttgtctacgctccacccaccattattcgattggaatgtatctgctgttttcctgaataaatcgtgctaagcctccttggtgcgtgcgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAAT
                                         || |||    ||||   |  || |  |  ||  |  |    | |  |      | ||   |  ||     | | |||  |    | ||| | | | | || |   ||     | |||| |||| || |||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||||||||||| || |||||  | || ||  
gtcagcaaactagatagtacgtacgcacgtacgtacctcctagctagctaggattacttagctgtgattgaca-tatatgatctacgacctagctcgatcttcccttgatctcttctgtgtg---catgc-atggcgcttttgcttgttgttcttgcagCCTCTCGCGAAGGAGCTGGGCATAAAGGTTGTGCCGACGTTCAAGATCCTCAAGGGCGGGAAGGTCGTGAAGGAGGTCACCGGCGCCAAGATCGACGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50878529|gb|AF527690.1|AF527690
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33822520|gb|CF337067.1|CF337067
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88461870|gb|CI506946.1|CI506946
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86534258|gb|CI174464.1|CI174464
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33817781|gb|CF334723.1|CF334723
EST:     GGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCAT
genomic: GG-ACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCAT
EST: gi|33815134|gb|CF333423.1|CF333423
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCA
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCA
EST: gi|29645149|gb|CB650156.1|CB650156
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|44671864|gb|CR285298.1|CR285298
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTTCAAGATTTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACA-TTCAAGA-TTC
EST: gi|86541210|gb|CI181416.1|CI181416
EST:     AGGACCAGGACGTTGTGTTCCTCAGACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86534538|gb|CI174744.1|CI174744
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|117240549|gb|CT862336.1|CT862336
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33664153|gb|CF295120.1|CF295120
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86533276|gb|CI173482.1|CI173482
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33816207|gb|CF333951.1|CF333951
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33666523|gb|CF297490.1|CF297490
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTC
EST: gi|33820250|gb|CF335938.1|CF335938
EST:     GGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TTTTTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTTTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88661553|gb|CI455909.1|CI455909
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33663078|gb|CF294045.1|CF294045
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAA
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAA
EST: gi|88661985|gb|CI461230.1|CI461230
EST:     GCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: GCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88962220|gb|CI097373.1|CI097373
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33662213|gb|CF293180.1|CF293180
EST:     AGGACCAGGACGCTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88831594|gb|CI369276.1|CI369276
EST:     ACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: ACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33824706|gb|CF338162.1|CF338162
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33666097|gb|CF297064.1|CF297064
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86541225|gb|CI181431.1|CI181431
EST:     AGGACCAGGACGTTGTGTTCCTCAGACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86601234|gb|CI251608.1|CI251608
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33813483|gb|CF332629.1|CF332629
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|18386771|gb|BM419969.1|BM419969
EST:     GGACCAGGACGTTGTGTTCCTC-AACTCGAGCTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: GGACCAGGACGTTGTGTTCCTCAAACTCGA-CTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86418383|gb|CI032592.1|CI032592
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|58591738|gb|CF990046.1|CF990046
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33664154|gb|CF295121.1|CF295121
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|87014468|gb|CI283980.1|CI283980
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88663546|gb|CI483088.1|CI483088
EST:     GGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: GGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|38470980|gb|CF955111.1|CF955111
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCGTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88469126|gb|CI406397.1|CI406397
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88465022|gb|CI514794.1|CI514794
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33817783|gb|CF334724.1|CF334724
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TTTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33666442|gb|CF297409.1|CF297409
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33820067|gb|CF335849.1|CF335849
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33662214|gb|CF293181.1|CF293181
EST:     GACGCTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: GACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86541218|gb|CI181424.1|CI181424
EST:     AGGACCAGGACGTTGTGTTCCTCAGACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86510812|gb|CI153445.1|CI153445
EST:     ACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: ACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88208904|gb|CI206755.1|CI206755
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88224877|gb|CI224399.1|CI224399
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88485338|gb|CI422609.1|CI422609
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88507037|gb|CI434543.1|CI434543
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|89186418|gb|CI262250.1|CI262250
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86853429|gb|CI327907.1|CI327907
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88662153|gb|CI465543.1|CI465543
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33816403|gb|CF334046.1|CF334046
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33819420|gb|CF335530.1|CF335530
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88319325|gb|CI515786.1|CI515786
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86507518|gb|CI150151.1|CI150151
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACTACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33813485|gb|CF332630.1|CF332630
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TTTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTTTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33662576|gb|CF293543.1|CF293543
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88464992|gb|CI514764.1|CI514764
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88459042|gb|CI514323.1|CI514323
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|38475503|gb|CF959636.1|CF959636
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33665669|gb|CF296636.1|CF296636
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88664044|gb|CI489857.1|CI489857
EST:     CAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: CAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33666524|gb|CF297491.1|CF297491
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88286036|gb|CI515160.1|CI515160
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33815136|gb|CF333424.1|CF333424
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88662680|gb|CI472135.1|CI472135
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|33662996|gb|CF293963.1|CF293963
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|38472469|gb|CF956601.1|CF956601
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACTACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88319145|gb|CI513209.1|CI513209
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|29645150|gb|CB650157.1|CB650157
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|88242938|gb|CI240789.1|CI240789
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
EST: gi|86525165|gb|CI165371.1|CI165371
EST:     AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG                         TCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC
genomic: AGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 240

GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttaga ... cgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctgttttcctgaataaatcgtgctaagcctccttggtgcgtgcgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAAT
            tgaataaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagttagaactgattttctttctcttgtctacgctccacccaccattattcgattggaatgtatctgctgttttcctgaataaatcgtgctaagcctccttggtgcgtgcgattcgcagTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGACGGGAAGGTCGTCAAGGAGGTCACAGGTGCCAAACTAGATGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG