Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcacaaaagccacaaaactccactgatctcttcgcgtcaatctccattgatgaactgttgcctcgcatgaattcttcagtcttatcacgagctggatttattttgaaatgagcggcgtgaataagaaagggaacagatctcatcccactgctcagtgtaataactgtaaaactgactggttgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG

Basic information

species Oryza sativa
transcript LOC_Os01g68480.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68480.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G017419_T01 (Zea mays), 3'ss of exon 1
gtacttcacaaaagccacaaaactccactgatctcttcgcgtcaatctccattgatgaactgttgcctcgcatgaattcttcagtcttatcacgagctggatttattttgaaatgagcggcgtgaataaga-aagggaacagatctcatcccactgctcagtgtaataactgtaaaactgactggttgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG
                                                                                      |  | | || ||  | | |   |  |     |  |   |   |||  |  |   |  |   |||  |     ||||||  | | |   ||            |||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||||| || |||||||||
-------------------------------------------------------------------------------------atggtgatgatctctaatgacaatagatctcacctcactagctagatgattgtgtacgtagaatctgagacagcagtgtgttcattaacaat-----------atttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG

upper sequence: LOC_Os01g68480.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G025954_T01 (Zea mays), 3'ss of exon 1
gtacttcacaaaagccacaaaactccactgatctcttcgcgtcaatctccattgatgaactgttgcctcgcatgaattcttcagtcttatcacgagctggatttattttgaaatgagcggcgtgaataagaaagggaacagatctcatcccactgctcagtgtaataactgtaaaactgactggttgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG
                               |   | ||      |    | |||||  |      || ||   | |  |||      ||    ||    || |||  ||| | || || ||  | || |    | |    |   ||| |   |   | | |       |||     ||  ||  | |  ||||||||||| |||||||| |||||||| || || ||||||||||||||||||||| ||| |||||| ||||||||||| || |||||||| || |||||||||
------------------------------gtacgtacgtacgcgtgcaaagtgatg--cctcgatctagctcaagtcgttccaggagattgt-agaaccatatatcctgagacga-cgacgacagtacgtgttgcattgcagtacatactgatatactgcgcgc--gttgtggtg-tgtttgcatca--tgcagGTGCGGGCCTTGCAAAGTGATGGCTCCCAAGTTCCAGGAGATGTCCGAGAAGAACCTGGACGTCGTGTTCCTCAAGCTGGACTGCAACCAGGACAACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38475545|gb|CF959678.1|CF959678
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86534258|gb|CI174464.1|CI174464
EST:     TCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: TCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33817781|gb|CF334723.1|CF334723
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33815134|gb|CF333423.1|CF333423
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|29645149|gb|CB650156.1|CB650156
EST:     GTCAAGTCCGCAGGGCCCAAGGTCGTCGACCTCCACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGAGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|44671864|gb|CR285298.1|CR285298
EST:     GTCAA-TCGG-AGGGCCCAAGG-CGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86541210|gb|CI181416.1|CI181416
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86534538|gb|CI174744.1|CI174744
EST:     CAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGACACCGAAATTCCAGGAGATGTCCGAGAA
genomic: CAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|117240549|gb|CT862336.1|CT862336
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33664153|gb|CF295120.1|CF295120
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86533276|gb|CI173482.1|CI173482
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33666523|gb|CF297490.1|CF297490
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33820250|gb|CF335938.1|CF335938
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAG
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33663078|gb|CF294045.1|CF294045
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33816205|gb|CF333950.1|CF333950
EST:     TCAAGTCGGCAGGGCCCAAGGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: TCAAGTCGGCAGGGCCCAAGG-TCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|88962220|gb|CI097373.1|CI097373
EST:     TCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: TCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33662213|gb|CF293180.1|CF293180
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33666097|gb|CF297064.1|CF297064
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86541225|gb|CI181431.1|CI181431
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86601234|gb|CI251608.1|CI251608
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33813483|gb|CF332629.1|CF332629
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|58590366|gb|CF988674.1|CF988674
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86418383|gb|CI032592.1|CI032592
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|58591738|gb|CF990046.1|CF990046
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33664154|gb|CF295121.1|CF295121
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|87014468|gb|CI283980.1|CI283980
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|38470980|gb|CF955111.1|CF955111
EST:     AGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: AGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|88465022|gb|CI514794.1|CI514794
EST:     TACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: TACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33817783|gb|CF334724.1|CF334724
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33666442|gb|CF297409.1|CF297409
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33820067|gb|CF335849.1|CF335849
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33665311|gb|CF296278.1|CF296278
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33666074|gb|CF297041.1|CF297041
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86541218|gb|CI181424.1|CI181424
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|88208904|gb|CI206755.1|CI206755
EST:     CGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: CGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|88224877|gb|CI224399.1|CI224399
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|88485338|gb|CI422609.1|CI422609
EST:     CATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: CATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|89186418|gb|CI262250.1|CI262250
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|58594476|gb|CF992784.1|CF992784
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33816403|gb|CF334046.1|CF334046
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33819420|gb|CF335530.1|CF335530
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAAATT-CAGGAGATGTCCGAGA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCG-AAATTCCAGGAGATGTCCGAGA
EST: gi|33813485|gb|CF332630.1|CF332630
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33662576|gb|CF293543.1|CF293543
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|38475503|gb|CF959636.1|CF959636
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|33666524|gb|CF297491.1|CF297491
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATATTCAGGAGATGTCCGAGA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAAT-TCCAGGAGATGTCCGAGA
EST: gi|33662996|gb|CF293963.1|CF293963
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|38472469|gb|CF956601.1|CF956601
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|29645150|gb|CB650157.1|CB650157
EST:     GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|88242938|gb|CI240789.1|CI240789
EST:     GTCAAGTCGGCAGGGCCCAGGGTCGTCGTCCTCGACATGTACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: GTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
EST: gi|86525165|gb|CI165371.1|CI165371
EST:     TACACCCAATG                         GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA
genomic: TACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 91

CCGTGACCGGGCAGGTGACGGAGGTGAACAAGGATACCTTCTGGCCAATTGTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCCAATGgtacttcaca ... tgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctcatcccactgctcagtgtaataactgtaaaactgactggttgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG
                      taataactgtaaaa  TA-rich tract