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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCAAATGTTCCTGATTTTAAATCTGCAAAAATGGAAAAGACTCGCTTTTCTGATCTGAACTTCCGTCTCGGTGCTGGGTACCTCTACTGTCATCAGgttcttatctattctccttatgcctttattgttgtgatgtttctgcatcactttttttgtggaaatcaaatcgtcatttagtcacaatcaaaccttgtgt...

Basic information

species Oryza sativa
transcript LOC_Os01g68440.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68440.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G166875_T01 (Zea mays), 5'ss of exon 9
TGTTTCAAATGTTCCTGATTTTAAATCTGCAAAAATGGAAAAGACTCGCTTTTCTGATCTGAACTTCCGTCTCGGTGCTGGGTACCTCTACTGTCATCAGgttcttatctattctccttatgcctttattgttgtgatgtttctgcatcactttttttgtggaaatcaaatcgtcatttagtcacaatcaaacctt-gtgt----
| |||| || || ||||| |||||||||| ||| ||| ||| ||||||  | ||||| ||| ||||||| | ||||||||||||||||||||| || ||||||| | |||  |||| ||  |||||  |  ||  |||  |||  |||     ||  ||   |  |         ||||  |  |  ||     ||  | |    
TATTTCTAACGTGCCTGAATTTAAATCTGAAAAGATGCAAACGACTCGTATCTCTGACCTGCACTTCCGGCCCGGTGCTGGGTACCTCTACTGCCACCAGgttcctgtct--tctcttt-cgccttactgtttcagatagttc--cattttccttggtgaaaagtttgtgcgtggatttgatttccttcgttttttcatatcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58674840|gb|CK063527.1|CK063527
EST:     TTTCTGATCTGAACTTCCGTCTCGGTGCTGGGTACCTCTACTGTCATCAG                         GGAAACTGCAAACACATGATTGTGATCAGGGACATGAGGTTGATCCACCCG
genomic: TTTCTGATCTGAACTTCCGTCTCGGTGCTGGGTACCTCTACTGTCATCAGgttcttatct ... acgttttcagGGAAACTGCAAACACATGATTGTGATCAGGGACATGAGGTTGATCCACCCG
EST: gi|89170517|gb|CI039794.1|CI039794
EST:     TTTCTGATCTGAACTTCCGTCTCGGTGCTGGGTACCTCTACTGTCATCAG                         GGAAACTGCAAACACATGATTGTGATCAGGGACATGAGGTTGATCCACCCG
genomic: TTTCTGATCTGAACTTCCGTCTCGGTGCTGGGTACCTCTACTGTCATCAGgttcttatct ... acgttttcagGGAAACTGCAAACACATGATTGTGATCAGGGACATGAGGTTGATCCACCCG