1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcatctaaattttcttttcatattattatatttaatattcatgtcttatgtggctcacaaaatgatagggtctgatgttctttcgaactatcacatgcagAATGTCAGCTAGTTCCACCTTTGGAAATGGTGCTATCACATCAAGCTCATCAGGTGAGAGAGAGACTTCCAGATCACCTACTGAGGATACGGCAAGCATA
species | Oryza sativa |
transcript | LOC_Os01g68440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGATTCCACTGCTTTGTCACAGCTGGAGGATCAGAGGATTGATGGAGG AATGTCAGCTAGTTCCACCTTTGGAAATGGTGCTATCACATCAAGCTCATC
genomic: TGGGATTCCACTGCTTTGTCACAGCTGGAGGATCAGAGGATTGATGGAGGgtaagctatt ... tcacatgcagAATGTCAGCTAGTTCCACCTTTGGAAATGGTGCTATCACATCAAGCTCATC
ttatgtggctcacaaaatgatagggtctgatgttctttcgaactatcacatgcagAATGTCAGCTAGTTCCACCTTTGGAAATGGTGCTATCACATCAAGCTCATCAGGTGAGAGAGAGACTTCCAGATCACCTACTGAGGATACGGCAAGCATA
aaaatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatctaaattttcttttcatattattatatttaatattcatgtcttatgtggctcacaaaatgatagggtctgatgttctttcgaactatcacatgcagAATGTCAGCTAGTTCCACCTTTGGAAATGGTGCTATCACATCAAGCTCATCAGGTGAGAGAGAGACTTCCAGATCACCTACTGAGGATACGGCAAGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - -tcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaaa