1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgttttcttaagctgttcaatagcatgtagtgtcatttttctgtcagtttgacccttgatgcgtggtctttctctggtgcagCCATGGTATGCCTATGCAATAGCTGCATCAATCCTCCGTACAGCAAATCTTTCAGTCCCACTGAAG
species | Oryza sativa |
transcript | LOC_Os01g68390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTACAACAAGCATAACATCGCTTGGTTCACTCCAGTGGAGCTCTTNAAG CNATGGTATGCCTATGCAATAGCTGCEST: gi|88327959|gb|CI648362.1|CI648362
genomic: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAGgtgttttctt ... tctggtgcagCCATGGTATGCCTATGCAATAGCTGC
EST: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAG CCATGGTATGCCTATGCAAEST: gi|88348861|gb|CI653905.1|CI653905
genomic: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAGgtgttttctt ... tctggtgcagCCATGGTATGCCTATGCAA
EST: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAG CCATGGTATGCCTATGCAATAGCTGCATCAATCCTCCGTACAGCAAAEST: gi|88348502|gb|CI629991.1|CI629991
genomic: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAGgtgttttctt ... tctggtgcagCCATGGTATGCCTATGCAATAGCTGCATCAATCCTCCGTACAGCAAA
EST: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAG CCATGGTATGCCTATGCAATAGCTG
genomic: TGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAGgtgttttctt ... tctggtgcagCCATGGTATGCCTATGCAATAGCTG
tagtgtcatttttctgtcagtttgacccttgatgcgtggtctttctctggtgcagCCATGGTATGCCTATGCAATAGCTGCATCAATCCTCCGTACAGCAAATCTTTCAGTCCCACTGAAG
tctttctct CT-rich tract
tcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttttcttaagctgttcaatagcatgtagtgtcatttttctgtcagtttgacccttgatgcgtggtctttctctggtgcagCCATGGTATGCCTATGCAATAGCTGCATCAATCCTCCGTACAGCAAATCTTTCAGTCCCACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG