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...ctgttgaactccattgattgtttgccaattacgattctgtgttgtgctgttttaatatcttggatatttgactagaaacggaagtaatttgcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAG
species | Oryza sativa |
transcript | LOC_Os01g68390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACG GTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAACAAGCATAACAEST: gi|88338747|gb|CI660518.1|CI660518
genomic: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACGgtaatcctcc ... gcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
EST: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACG GTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACAEST: gi|88327959|gb|CI648362.1|CI648362
genomic: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACGgtaatcctcc ... gcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
EST: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACG GTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACAEST: gi|88742011|gb|CI765519.1|CI765519
genomic: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACGgtaatcctcc ... gcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
EST: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACG GTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACAEST: gi|88348861|gb|CI653905.1|CI653905
genomic: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACGgtaatcctcc ... gcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
EST: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACG GTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACAEST: gi|88348502|gb|CI629991.1|CI629991
genomic: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACGgtaatcctcc ... gcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
EST: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACG GTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
genomic: GGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCAACCAGCTCGACGgtaatcctcc ... gcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACA
gctgttttaatatcttggatatttgactagaaacggaagtaatttgcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAG
tttgctt CT-rich tract
tttaatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttgaactccattgattgtttgccaattacgattctgtgttgtgctgttttaatatcttggatatttgactagaaacggaagtaatttgcttatgtagGTAGGAGTGCGTATATGCAGTACCTTGATAAGTTGTACAAGAAGCATGACATCGCTTGGTTCACTCCAGTGGAGCTCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
ctgttga
- - - - ctccatt
- - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacggaa