1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGCTGAAATGTATTTGACAGAAAAGCTTACTCGACAAGAAATAAGTGAGACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatgagagcacaacatgtctacattttccttgaaagaataaaacaggatgtatttgtgtctcttccacccataatcagccattgttgtctctgtgtatgtataattttatatctgtgtag
species | Oryza sativa |
transcript | LOC_Os01g68040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAG GGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGGEST: gi|88690169|gb|CI734248.1|CI734248
genomic: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatg ... atctgtgtagGGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGG
EST: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAG GTATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGGEST: gi|88688236|gb|CI731812.1|CI731812
genomic: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatg ... atctgtgtagGGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGG
EST: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAG GTATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGGEST: gi|29673380|gb|CB669655.1|CB669655
genomic: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatg ... atctgtgtagGGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGG
EST: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAG GGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGGEST: gi|88691178|gb|CI735257.1|CI735257
genomic: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatg ... atctgtgtagGGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGG
EST: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAG GTATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGG
genomic: ACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatg ... atctgtgtagGGATGAAGATTATAGAAGTGAGGCAGATGTAAGCAATGGTACCTTTATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTGAAATGTATTTGACAGAAAAGCTTACTCGACAAGAAATAAGTGAGACTTCATCTAGAGTTGAGGTTGATGACCCATCTCAACTGGAGGTGGATAGgtaagtcatgagagcacaacatgtctacattttccttgaaagaataaaacaggatgtatttgtgtctcttccacccataatcagccattgttgtctctgtgtatgtataattttatatctgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA