1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...accttagttatggagaaactcatgcatcttatgaaaccagacaacctgtaaaacatagcctacttgatgtttatagtgtctgacctttttcctccttcagACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCAAAGATAAGCACACTAAATCTTGAGCGAGTTAGGCAAATTAAGAGCCGCC
species | Oryza sativa |
transcript | LOC_Os01g68040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCACTTGAAGTGTGCCTTGAGTCAGCCTGTAGAAGCCTAGAAGAGGAA ACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCAEST: gi|29673380|gb|CB669655.1|CB669655
genomic: GAGCACTTGAAGTGTGCCTTGAGTCAGCCTGTAGAAGCCTAGAAGAGGAAgtaagtgctt ... cctccttcagACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCA
EST: GAGCACTTGAAGTGTGCCTTGAGTCAGCCTGTAGAAGCCTAGAAGAGGAA ACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCA
genomic: GAGCACTTGAAGTGTGCCTTGAGTCAGCCTGTAGAAGCCTAGAAGAGGAAgtaagtgctt ... cctccttcagACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCA
ctgtaaaacatagcctacttgatgtttatagtgtctgacctttttcctccttcagACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCAAAGATAAGCACACTAAATCTTGAGCGAGTTAGGCAAATTAAGAGCCGCC
gtctgac putative branch site (score: 32)
tgtctgacctttttcc CT-rich tract
atgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accttagttatggagaaactcatgcatcttatgaaaccagacaacctgtaaaacatagcctacttgatgtttatagtgtctgacctttttcctccttcagACGTCGACTCTGGAGCAAGAGGCGTATCCGGCACTTGATGAGCTGACTTCAAAGATAAGCACACTAAATCTTGAGCGAGTTAGGCAAATTAAGAGCCGCC
- - - - - - - - - -tcatgca
- - - - - - - - - - - - - tcttatg
- - - - - - - - - - - - - - - - -aaaccag
- - - - - - - - - - - - - - - - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - - - - - aaacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtctg