1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgacctctgtcctcctgaatccataattttgttgaacttaataatttgtgcattctcacgtactagttttgcctaatgaaatgcatactcttcagtattgtgctgtgcatgcatctgactcgtatatgcactgacagCGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAACCTTTGAAAGATATGGAGAAAGAACCTTTGGTATCAGACCACCCCTTTGTTGAAACG
species | Oryza sativa |
transcript | LOC_Os01g67570.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGG CGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAACCTTTGAAAGATATGEST: gi|88333917|gb|CI645331.1|CI645331
genomic: ATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGGgtgtgacctc ... gcactgacagCGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAACCTTTGAAAGATATG
EST: ATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGG CGTGAAGGTGGAAGACCACCTATTCCEST: gi|88570123|gb|CI661298.1|CI661298
genomic: ATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGGgtgtgacctc ... gcactgacagCGTGAAGGTGGAAGACCACCTATTCC
EST: ATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGG CGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAAC
genomic: ATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGGgtgtgacctc ... gcactgacagCGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAAC
gcatactcttcagtattgtgctgtgcatgcatctgactcgtatatgcactgacagCGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAACCTTTGAAAGATATGGAGAAAGAACCTTTGGTATCAGACCACCCCTTTGTTGAAACG
atctgac putative branch site (score: 14)
tatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgacctctgtcctcctgaatccataattttgttgaacttaataatttgtgcattctcacgtactagttttgcctaatgaaatgcatactcttcagtattgtgctgtgcatgcatctgactcgtatatgcactgacagCGTGAAGGTGGAAGACCACCTATTCCTAGGAAAAAACCTTTGAAAGATATGGAGAAAGAACCTTTGGTATCAGACCACCCCTTTGTTGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC