1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtatcatcatttgaaatgcgtgtgccaatgatttctgacaatctggaggtttcagtgccctgtgtcttgtgcatttcttcagtttgtttttagttgactaactgtttgtcatcttatttttctttctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGG
species | Oryza sativa |
transcript | LOC_Os01g67570.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAAT ATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAAEST: gi|88333917|gb|CI645331.1|CI645331
genomic: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAATgtgagtatca ... ctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAA
EST: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAAT ATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAAEST: gi|88294432|gb|CI667406.1|CI667406
genomic: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAATgtgagtatca ... ctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAA
EST: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAAT ATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAAEST: gi|88570123|gb|CI661298.1|CI661298
genomic: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAATgtgagtatca ... ctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAA
EST: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAAT ATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAA
genomic: CGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAATgtgagtatca ... ctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAA
agtttgtttttagttgactaactgtttgtcatcttatttttctttctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGG
ttctaac putative branch site (score: 17)
tttgtcatcttatttt CT-rich tract
ttatttttctttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcatcatttgaaatgcgtgtgccaatgatttctgacaatctggaggtttcagtgccctgtgtcttgtgcatttcttcagtttgtttttagttgactaactgtttgtcatcttatttttctttctaaccgcagATTCAATAGGTTCGACTATCCACCAATATTTCACCGCAAGGAAGATACTAACCCAGAGCAGTTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG