1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agtcatggccaactattttgtatgctatctcaaaaaaaaaaaaaaaaaaaaatctattttgtatgctgctaacttctttgggtgttaaaacttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGGTGGATGG
species | Oryza sativa |
transcript | LOC_Os01g67560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGEST: gi|88559515|gb|CI490097.1|CI490097
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGEST: gi|86836842|gb|CI347435.1|CI347435
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGEST: gi|88448886|gb|CI557958.1|CI557958
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGEST: gi|88540058|gb|CI470068.1|CI470068
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGEST: gi|88508844|gb|CI436350.1|CI436350
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGEST: gi|88252935|gb|CI350360.1|CI350360
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
EST: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG GTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
genomic: TGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGgtttgctcaa ... cttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATG
aaaaaaatctattttgtatgctgctaacttctttgggtgttaaaacttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGGTGGATGG
tgctaac putative branch site (score: 1)
cttgttcc putative PPT
aatctattttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcatggccaactattttgtatgctatctcaaaaaaaaaaaaaaaaaaaaatctattttgtatgctgctaacttctttgggtgttaaaacttgttccagGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGGTGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- -catggcc
- - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - caaaaaa
- - - - - - - - - - - - - - - -aaaaaaa