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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCGATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGgtaggttatccatctcgtatcctgtttaattagttcaatcgagttcctttgttctgacaaagacaacgagcattgatggtgttgcttggactcaatttct...

Basic information

species Oryza sativa
transcript LOC_Os01g67560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67560.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G091435_T03 (Zea mays), 5'ss of exon 1
GTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCGATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGgtaggttatccatctcgtatcctgtttaat--tagttcaatcgagttcctttgttctgacaaagacaacgagcattgatggtgttgcttggactcaatttct
 |||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| ||||  |||| ||||| |||||| | ||||| ||||| |||||||| ||||  |     || |      ||  |  |||    |||  |    | | | ||     |||     |||||        || |   |  || |  
ATCACATTCCGCCACGGTTACAGCACTAGCAGTAGCAATTGGATTCCAGGATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTGgtaggctatcagttctccattccaacccatgttccttctgaagagcacaagaggttttacttcttcaatcttgattgaaaaaaaaactggtcatttatat--

upper sequence: LOC_Os01g67560.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G059108_T01 (Zea mays), 5'ss of exon 1
GTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCGATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGgtaggttatccatctcgtatcctg--tttaattagttcaatcgagttcctttgttctgacaaagaca-acgagcattgatggtgttgcttggactcaatttct
 |||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||  |||  |||| ||||| |||||| | ||||| |||||||||||||||||||  |     ||||     |  ||   |   |    |||    |  |  ||    || | | ||  | ||||  | |   |||   |   ||   
ATCACATTCTGCCACGGTTACAGCACTAGCAGTAGCGATTGGGTTGCAAGATGGCTTTAACTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGTGTGgtaggttatcagttctccatcccaacctatatccttctgaagaggttttacttcttagatcttgatagaagaaaaatgatcatttatattgttgttgctt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58600636|gb|CK011164.1|CK011164
EST:     ATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTG                         GTTATGTACGATGCTTCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAG
genomic: ATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGgtaggttatc ... tgattggcagGTTATGTACGATGCTTCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAG