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gtaaatttgacattgtggactaaattttcgtggatatcactgaggtaattagatgatctgatcgttgttatttatttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAAAGGAAATTTCTGGAAGCTCTTCG
species | Oryza sativa |
transcript | LOC_Os01g67000.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|88987357|gb|CI034321.1|CI034321
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: ATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|87007164|gb|CI277239.1|CI277239
genomic: ATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|33797534|gb|CF324627.1|CF324627
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|88995507|gb|CI022830.1|CI022830
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|88988016|gb|CI018059.1|CI018059
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|86594857|gb|CI258111.1|CI258111
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|88200513|gb|CI200363.1|CI200363
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|86497463|gb|CI140096.1|CI140096
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTAATGATGACCTTGCACAAATGAAAEST: gi|86593881|gb|CI260110.1|CI260110
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|88228435|gb|CI227915.1|CI227915
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: ATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|86493106|gb|CI135739.1|CI135739
genomic: ATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAEST: gi|86432017|gb|CI085628.1|CI085628
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
EST: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAG TTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
genomic: CCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGATCTTGAAGGAAAGgtaaatttga ... ttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAA
tggatatcactgaggtaattagatgatctgatcgttgttatttatttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAAAGGAAATTTCTGGAAGCTCTTCG
atctgat putative branch site (score: 59)
tttattt putative PPT
ttgttatttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgacattgtggactaaattttcgtggatatcactgaggtaattagatgatctgatcgttgttatttatttgtgcacagTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAATGAAAAAGGAAATTTCTGGAAGCTCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG