1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACTTCAACAAAAGTGAGCGAAATGCTGGGGAATGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactcttttcattttatcgattttctctgaccggtattatttgttgtgttagctaaagtacatttgttactgtatcacttgttcgtgcagtgggcacta...
species | Oryza sativa |
transcript | LOC_Os01g67000.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|87007164|gb|CI277239.1|CI277239
genomic: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: TTTCAGCATTTGAGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|33797534|gb|CF324627.1|CF324627
genomic: TTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|88988016|gb|CI018059.1|CI018059
genomic: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: AGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|86594857|gb|CI258111.1|CI258111
genomic: AGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|86593881|gb|CI260110.1|CI260110
genomic: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: AAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|86493106|gb|CI135739.1|CI135739
genomic: AAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATGEST: gi|86432017|gb|CI085628.1|CI085628
genomic: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
EST: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAG TTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
genomic: TGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactctttt ... ttattgtcagTTATGGCAATGGAGTCCCAAGCAGAGGCACTCGGTCAGTTGGCAACTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTTCAACAAAAGTGAGCGAAATGCTGGGGAATGTAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGgtactcttttcattttatcgattttctctgaccggtattatttgttgtgttagctaaagtacatttgttactgtatcacttgttcgtgcagtgggcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA