1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCATCCTACAAAGTACAGCAAGTTGATACAACAGGTGCAGGTGATGCGTTTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttactgtcaagcacttttgttggtattgttatgctacagaaataggtggttatagttaaactaatttgatgtttgctgactctgcag
species | Oryza sativa |
transcript | LOC_Os01g66940.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|8857953|gb|AU095271.1|AU095271
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|86487292|gb|CI129925.1|CI129925
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|29681027|gb|CB677302.1|CB677302
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|86855291|gb|CI265217.1|CI265217
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88243805|gb|CI242927.1|CI242927
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|29658300|gb|CB654575.1|CB654575
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88241712|gb|CI241561.1|CI241561
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|38469084|gb|CF953215.1|CF953215
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCAGTCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|15856845|gb|BI809657.1|BI809657
genomic: TGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCA-TCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88249967|gb|CI249816.1|CI249816
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTTTGCTGCGAAGAATTGTCCAGGATCCATTATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|58686862|gb|CK075549.1|CK075549
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|87029122|gb|CI276390.1|CI276390
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88241346|gb|CI241195.1|CI241195
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: CTGCGAAGGATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88228441|gb|CI227921.1|CI227921
genomic: CTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|86426341|gb|CI071438.1|CI071438
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGTGAAGAATTGTCCAGGATCNATTATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88244160|gb|CI243282.1|CI243282
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|86260900|gb|CI066575.1|CI066575
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATTATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|89193879|gb|CI018197.1|CI018197
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCAEST: gi|88200672|gb|CI200522.1|CI200522
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
EST: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAA GATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
genomic: TTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttact ... gactctgcagGATCAGAAGAAGCTTGAGGAAGCGATTAAATTTGCCAATGCGTGCGGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCATCCTACAAAGTACAGCAAGTTGATACAACAGGTGCAGGTGATGCGTTTGTTGGTGCTCTGCTGCGAAGAATTGTCCAGGATCCATCATCGTTGCAAgtaagttactgtcaagcacttttgttggtattgttatgctacagaaataggtggttatagttaaactaatttgatgtttgctgactctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA