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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgcaaatcccaaaagtcagtttcaaagtgtgcagtgaactgacctgacaagaaactaacacttgttttgttacagAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATT

Basic information

species Oryza sativa
transcript LOC_Os01g66860.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33676447|gb|CF304686.1|CF304686
EST:     GTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCAT                         AAACTCTTTCAGGCATGAGCTGACCGTATTGG
genomic: GTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATgtaagatgca ... tttgttacagAAACTCTTTCAGGCATGAGCTGACCGTATTGG
EST: gi|66923829|gb|CX110677.1|CX110677
EST:     GTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCAT                         AAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAA
genomic: GTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATgtaagatgca ... tttgttacagAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaagtgtgcagtgaactgacctgacaagaaactaacacttgttttgttacagAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATT
                                aactaac  putative branch site (score: 1)
                                        cttgtttt  CT-rich tract
                                            ttttgtta  TA-rich tract