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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaactctctgtcccaattgcgttccagtgaagttggttgaagaaacattatagataagcagaaaattaatgttctaatgacgtgcgtgcatcgtacagGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCAT

Basic information

species Oryza sativa
transcript LOC_Os01g66860.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33676447|gb|CF304686.1|CF304686
EST:     AATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAG                         GGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATA
genomic: AATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGgtaaaaactc ... catcgtacagGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATA
EST: gi|66923829|gb|CX110677.1|CX110677
EST:     AATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAG                         GGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATA
genomic: AATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGgtaaaaactc ... catcgtacagGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacattatagataagcagaaaattaatgttctaatgacgtgcgtgcatcgtacagGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCAT
                            ttctaat  putative branch site (score: 2)
                  aaaattaatgttctaa  TA-rich tract