1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttagtcaattttattcgagtgactactgagtactgactggacaagactttttccttggacggtgcttatgttgttttaccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCCCTTCTAGCAATGGGGACGCTAAGGAGCCAACTGAATCACAAGACAACG
species | Oryza sativa |
transcript | LOC_Os01g66520.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCEST: gi|88589158|gb|CI707017.1|CI707017
genomic: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
EST: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCEST: gi|86482980|gb|CI125613.1|CI125613
genomic: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
EST: GCGCTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCEST: gi|89166141|gb|CI103231.1|CI103231
genomic: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
EST: TCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGCGGTGAGAACAACTCAATAAATCCATCCEST: gi|33797724|gb|CF324721.1|CF324721
genomic: TCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
EST: GCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCEST: gi|88584733|gb|CI702306.1|CI702306
genomic: GCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
EST: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCEST: gi|86535377|gb|CI175583.1|CI175583
genomic: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
EST: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAG AACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCGATAAATCCATCC
genomic: GCACTCTTGCTTCAAAAGATTCAAATGAACCTGAAACTTTTGCCAAAGAGgttagtcaat ... taccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCC
actgactggacaagactttttccttggacggtgcttatgttgttttaccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCCCTTCTAGCAATGGGGACGCTAAGGAGCCAACTGAATCACAAGACAACG
tactgac putative branch site (score: 3)
ttttaccct putative PPT
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcaattttattcgagtgactactgagtactgactggacaagactttttccttggacggtgcttatgttgttttaccctgcagAACGAAACGAGCACAAGTTGCAGTGGTGAGAACAACTCAATAAATCCATCCCCTTCTAGCAATGGGGACGCTAAGGAGCCAACTGAATCACAAGACAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG