1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAGGAGGAGGAGGCCATGAAGCTTGACGTGAACGCGCTCCGCTACCTCTCCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctgatacacttgccacgaccatccttaaacccagcaccgcgtgagaattgctgtgtccttgtgcctgacttggtggtcttgattttggattcgcag
species | Oryza sativa |
transcript | LOC_Os01g66520.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAAEST: gi|88358383|gb|CI606892.1|CI606892
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAAEST: gi|88354482|gb|CI624872.1|CI624872
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAAEST: gi|88400799|gb|CI616804.1|CI616804
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAAEST: gi|88421557|gb|CI618681.1|CI618681
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAAEST: gi|58662486|gb|CK051172.1|CK051172
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAAEST: gi|88390372|gb|CI607408.1|CI607408
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
EST: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAAC CACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
genomic: CCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctg ... ggattcgcagCACGAGATCGTTCCTGCCGAGCTCGTCGACCGCATCGCCGGATTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAGGAGGAGGCCATGAAGCTTGACGTGAACGCGCTCCGCTACCTCTCCAAGGATGACTTCCGCGTCCTCACCGCCGTCGAGATGGGCATGCGTAACgtaagttctgatacacttgccacgaccatccttaaacccagcaccgcgtgagaattgctgtgtccttgtgcctgacttggtggtcttgattttggattcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG