1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagttcacatgaacttaggtgataggcttaaggttttcttatattcagtaatatctaatcctcaatcttgtttttttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTATAGCCAGAAATACTGGTGCACGTGGTCTGAGAGCCATCTTGGAAAGCC
species | Oryza sativa |
transcript | LOC_Os01g66330.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA GTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTEST: gi|25806957|gb|CA762918.1|CA762918
genomic: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAAgtgagttcac ... tttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCT
EST: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA GTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTEST: gi|88690979|gb|CI735058.1|CI735058
genomic: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAAgtgagttcac ... tttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCT
EST: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA GTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTEST: gi|88691601|gb|CI733679.1|CI733679
genomic: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAAgtgagttcac ... tttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCT
EST: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA GTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTEST: gi|88688810|gb|CI732386.1|CI732386
genomic: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAAgtgagttcac ... tttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCT
EST: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA GTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTEST: gi|84117509|gb|CD151276.1|CD151276
genomic: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAAgtgagttcac ... tttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCT
EST: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA GTTAAGTTACACTTTACTGATGGTGCACTTAGAATAG
genomic: CAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAAgtgagttcac ... tttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAG
aaggttttcttatattcagtaatatctaatcctcaatcttgtttttttccttcagGTTAAGTTACACTTTACTGATGGTGCACTTAGAATAGTAGCCAAGAAGGCTATAGCCAGAAATACTGGTGCACGTGGTCTGAGAGCCATCTTGGAAAGCC
atctaat putative branch site (score: 11)
tcctcaatcttgtttt CT-rich tract
ttatattcagtaatat TA-rich tract