1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagcattttggaacctttggctaactgaactccttatggtctacttggtaccaccaataccatggagctgtgtttcatcttaaaaaaactatcacatggtcatgaatacgaaaccacgtgctcctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGACGCTTGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTG
species | Oryza sativa |
transcript | LOC_Os01g66330.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGGAATCT GTTGAGAGTGGCGATCTTGCAAGATATGGTTTGTTACCAGAGTTTATTGGAEST: gi|58595447|gb|CK005975.1|CK005975
genomic: ATTGTTGGAATCTgtaagcattt ... cctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGA
EST: GAAGTTCTGAAGTGACTGATCCAATGGTCACTTCATCATTGTCGGAATCT GTTGAGAGTGGCGATCTTGCAAGATATGEST: gi|88690979|gb|CI735058.1|CI735058
genomic: GAAGTTCTGAAGTGACTGATCCAATGGTCACTTCATCATTGTTGGAATCTgtaagcattt ... cctttggcagGTTGAGAGTGGCGATCTTGCAAGATATG
EST: ATTGTTGGAATCT GTTGAGAGTGGCGATCTTGCAAGATATGGTTTGTTACCAGAGTTTATTGGAEST: gi|88691601|gb|CI733679.1|CI733679
genomic: ATTGTTGGAATCTgtaagcattt ... cctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGA
EST: ATTGTTGGAATCT GTTGAGAGTGGCGATCTTGCAAGATATGGTTTGTTACCAGAGTTTATTGGAEST: gi|88688810|gb|CI732386.1|CI732386
genomic: ATTGTTGGAATCTgtaagcattt ... cctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGA
EST: ATTGTTGGAATCT GTTGAGAGTGGCGATCTTGCAAGATATGGTTTGTTACCAGAGTTTATTGGAEST: gi|84117509|gb|CD151276.1|CD151276
genomic: ATTGTTGGAATCTgtaagcattt ... cctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGA
EST: GAAGTTCTGAAGTGACTGATCCAATGGTCACTTCATCATTGTTGGAATCT GTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGA
genomic: GAAGTTCTGAAGTGACTGATCCAATGGTCACTTCATCATTGTTGGAATCTgtaagcattt ... cctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGA
tcttaaaaaaactatcacatggtcatgaatacgaaaccacgtgctcctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGACGCTTGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTG
tgctccttt CT-rich tract
aaaaaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattttggaacctttggctaactgaactccttatggtctacttggtaccaccaataccatggagctgtgtttcatcttaaaaaaactatcacatggtcatgaatacgaaaccacgtgctcctttggcagGTTGAGAGTGGCGATCTTGCAAGATATGGTTTGATACCAGAGTTTATTGGACGCTTGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT