1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCAGAGATCGGTTTGGGAGGAAACAGCCAGCTACTGACACTGGGCATCGGGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgacttgctatgatctatcacacatactgaacaaatgggattcggcagtatttgaacatatgcttatttcgttagtggtcactttgggtttcaatttctctttttcgaaagccaattctaactgttcttaactatgttatttgcag
species | Oryza sativa |
transcript | LOC_Os01g66170.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|86507543|gb|CI150176.1|CI150176
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|218500098|gb|FG961175.1|FG961175
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTTACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|88525273|gb|CI454258.1|CI454258
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|29686432|gb|CB682707.1|CB682707
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|86505655|gb|CI148288.1|CI148288
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|88998330|gb|CI038215.1|CI038215
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|58686934|gb|CK075621.1|CK075621
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTTACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|86497649|gb|CI140282.1|CI140282
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAATEST: gi|86889147|gb|CI315758.1|CI315758
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
EST: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAG GATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
genomic: GGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgactt ... ttatttgcagGATGCTGTAAAGGAGATCGATGAATAGAATGGTAGGATTCTCTAGTAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGAGATCGGTTTGGGAGGAAACAGCCAGCTACTGACACTGGGCATCGGGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGgtattgacttgctatgatctatcacacatactgaacaaatgggattcggcagtatttgaacatatgcttatttcgttagtggtcactttgggtttcaatttctctttttcgaaagccaattctaactgttcttaactatgttatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG