1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTTGCGTTGATCCCGCGCCGGTGATCGACGGGAGAAGGGCTAACTGTAATCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATGgttagacatttgccattatctcaccagctaacaaaagcaacatagaacacacagttagctagcttgcttgaaagccttcgatgacaacttcttatgagtt...
species | Oryza sativa |
transcript | LOC_Os01g65550.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAAGCCCACAGCATG GAGGGGCTAGGAGEST: gi|58671703|gb|CK060389.1|CK060389
genomic: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATGgttagacatt ... gttgctacagGAGGGGCTAGGAG
EST: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATG GAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTTTAGCCAGCAGGCAGGGAEST: gi|58606623|gb|CK034656.1|CK034656
genomic: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATGgttagacatt ... gttgctacagGAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTTTAGCCAGCAGGCAGGGA
EST: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATG GAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTTTAGCCAGCAGGCAGGGAEST: gi|58666021|gb|CK054707.1|CK054707
genomic: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATGgttagacatt ... gttgctacagGAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTTTAGCCAGCAGGCAGGGA
EST: TCTGGCTTCCCTTGGGGTTCAGAGCTCTAGGCCTCCAACCCCACAGCATG GAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTT
genomic: TCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATGgttagacatt ... gttgctacagGAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGCGTTGATCCCGCGCCGGTGATCGACGGGAGAAGGGCTAACTGTAATCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACAGCATGgttagacatttgccattatctcaccagctaacaaaagcaacatagaacacacagttagctagcttgcttgaaagccttcgatgacaacttcttatgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa