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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTCAGAATGGATTGGGAGCAACTTAAAAAAGGACAATGAACATGTGACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttcacctttccttttcttctgaccacacttccttttctgatttcctacccattctaaatctgtgaaatagctgcttattataaaccatgaatgttaatagctgcttgctcatatgaatcatacatcgacatgtttaattctgttttgctatctgtaaactgacgaaaattattcttgatatacag

Basic information

species Oryza sativa
transcript LOC_Os01g64262.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64262.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G831584_T02 (Zea mays), 5'ss of exon 3
CTCTTTCAGAATGGATTGGGAGCAACTTAAAAAAGGACAATGAACATGTGACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttcacctttcc-ttttcttctgaccacacttccttttctgatttcctacccattctaaatctgtgaaatagctgcttattataaaccatgaatgttaatagctgcttgctcatatgaatcatacatcgacatgtttaattctgttttgctatctgtaaactgacgaaaattattcttgatatacag
|||||||||||||||| || || ||||| || |||||||| || |||||||| ||||| ||  ||||||||||||||||||| ||||||| ||||||||||||||||| |   |    || |||| | ||   |  |  |||    || |       ||| |   |   ||| ||   | | ||  || |  || |  | | | | |||| |   | || |   | |       | ||  |||||| |                                            
CTCTTTCAGAATGGATCGGCAGTAACTTGAAGAAGGACAACGATCATGTGACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgtttagtgtgaagttctcttgtaactgtatattattt----atgtatcgagaattgtttgt---tgacatgaat-cataacatcagacaggcctatgatttgctgttaatttatgttgctga-gttcaaatattgttaattttcag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88573722|gb|CI665491.1|CI665491
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAC                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|88576291|gb|CI670436.1|CI670436
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|88347543|gb|CI637483.1|CI637483
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|86505777|gb|CI148410.1|CI148410
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|88358016|gb|CI650752.1|CI650752
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|88574008|gb|CI665777.1|CI665777
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|88344335|gb|CI655729.1|CI655729
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: gi|86499509|gb|CI142142.1|CI142142
EST:     ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG                         AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT