1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgttcacctttccttttcttctgaccacacttccttttctgatttcctacccattctaaatctgtgaaatagctgcttattataaaccatgaatgttaatagctgcttgctcatatgaatcatacatcgacatgtttaattctgttttgctatctgtaaactgacgaaaattattcttgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATCGCCATAGTGCAAGCAGAGCTCAGTGATAGATGGCTTTCTGATGATGTT
species | Oryza sativa |
transcript | LOC_Os01g64262.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAC AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|88576291|gb|CI670436.1|CI670436
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|88347543|gb|CI637483.1|CI637483
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|86505777|gb|CI148410.1|CI148410
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|88358016|gb|CI650752.1|CI650752
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|88574008|gb|CI665777.1|CI665777
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|88344335|gb|CI655729.1|CI655729
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATEST: gi|86499509|gb|CI142142.1|CI142142
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
EST: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAG AGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
genomic: ACATGGGCGTTTGATCTTCAGGCTGCCATAGATATGTTTAATTCTTATAGgtaatgttca ... tgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACAT
tgtttaattctgttttgctatctgtaaactgacgaaaattattcttgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATCGCCATAGTGCAAGCAGAGCTCAGTGATAGATGGCTTTCTGATGATGTT
ttattctt CT-rich tract
aaaattattcttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttcacctttccttttcttctgaccacacttccttttctgatttcctacccattctaaatctgtgaaatagctgcttattataaaccatgaatgttaatagctgcttgctcatatgaatcatacatcgacatgtttaattctgttttgctatctgtaaactgacgaaaattattcttgatatacagAGAAAGAAGCTATTGGACACTGCTTGAGAACCCACCAAAGGGTTTGGACATCGCCATAGTGCAAGCAGAGCTCAGTGATAGATGGCTTTCTGATGATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA